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A Systems Approach to Targeting Aging Biology

Protocol 01 by TimeWarp
Protocol 01 by TimeWarp
THE OPTIMIZATION ENGINE

This came from obsession.

A decade reading the science and studying the field's best protocols.

We built a system to score every compound against the biology of aging. 240 entered. 25 survived.

Protocol 01 was not formulated by trend. It was built by founders with a decade in longevity science, current on the research, and shaped by a Science Advisory Board with backgrounds across Stanford, Harvard, and MIT.

0Compound-pathway evaluationsClinical trials, mechanistic data, bioavailability
0Compounds screenedAcross 13 aging pathways
0Compounds selectedScored for efficacy, synergy, and stability
0FormulasThree daily. One monthly.
0One protocolEverything in one system

We cut the hype. We kept what the evidence backs.

Compound for compound, the most evidence-backed longevity formula you can buy.

Every compound was ranked on the research behind it: the strength of the studies, how consistent the results were, and how directly it acts on the twelve drivers of aging. Only the top compounds made the formula.

Harvard MIT Stanford

MIT founder. A Science Advisory Board with backgrounds across Harvard, Stanford, and MIT.

One protocol.

15

Star Compounds

Direct aging pathway support

10

Synergistic Amplifiers

Bioavailability, activation, cofactors

Optimization model

TimeWarp Labs

Optimization Model Informational:

Optimization engine

The TimeWarp Protocol was developed using mechanistic systems modeling and network-level analysis of the aging system.

Our research team built a multi-layer optimization engine that maps how molecular interventions influence the core mechanisms of aging.

The model evaluates longevity molecules across cellular pathways and the hallmarks of aging using evidence-weighted scoring.

Explore Each Optimization Layer

Select any layer below to see the full methodology, data, and decision framework behind it.

Optimization Layer 1

AgingPATHWAYS

We began by identifying the core biological pathways that regulate cellular aging, including metabolism, inflammation, repair, and mitochondrial function.

These upstream signaling networks served as the primary biological targets for candidate interventions.

Aging pathways visualization
Aging pathways visualization

Pathway Modules and Precision Scoring

Pathway Modules (P1-P13) represent upstream cellular control networks through which interventions act.

We selected these modules because they:

  • Sit upstream of major aging phenotypes and influence downstream cascades
  • Can be modulated by evidence-backed, non-prescription interventions
  • Provide a structured bridge between compound mechanisms and system-level biology

Each pathway is further divided into specific regulatory submodules within that network. Compounds are scored only when they engage defined submodules with supporting evidence.

This prevents vague pathway claims and enforces mechanistic precision.

13 Pathways

Explore Each Pathway

Click any pathway to see its submodules and scoring architecture

The central metabolic sensing network coordinates cellular energy balance, growth signaling, and stress adaptation. AMPK, mTORC1/2, insulin/IGF-1, and the sirtuin network collectively regulate the cell's investment in growth vs. maintenance, making P1 the highest-weight pathway in this model.

Core Submodules

AMPK energy sensing (AMP:ATP ratio detection)
mTORC1 nutrient and growth factor signaling
mTORC2 / PKB-Akt signaling axis
Insulin/IGF-1 signaling control (IIS pathway)
NAD+ metabolism and sirtuin axis (SIRT1-7)

Important Submodules

FOXO transcription factor programs
PGC-1a as nutrient-responsive mitochondrial biogenesis gate
GCN2 and integrated amino acid sensing
Metabolic flexibility and substrate switching
Ketone signaling and fasting-mimetic state

Peripheral Submodules

Adipokine signaling inputs (leptin/adiponectin)
PPAR nuclear receptor axis (PPARa/g/d)
REDD1/BNIP3-mediated low-energy sensing

The cellular redox system functions as a master sensor of molecular damage and energetic stress. NRF2-mediated antioxidant transcription, glutathione and thioredoxin systems, and NADPH-regenerating pathways collectively maintain the reductive capacity that protects DNA, proteins, and lipids from oxidative damage.

Core Submodules

NRF2/KEAP1 antioxidant transcription
Glutathione system (GSH synthesis, recycling, ratio)
NADPH regeneration and pentose phosphate pathway
Superoxide dismutase and catalase enzymatic defense

Important Submodules

Thioredoxin and peroxiredoxin systems
Heat shock response (HSF1; HSP90/HSP70)
Electrophile and xenobiotic response pathways
p38 MAPK/JNK stress kinase signaling
MAPK-Erk1/2 survival/proliferation crosstalk

Peripheral Submodules

Metal redox handling (labile iron pool, copper chaperones)
ROS hormetic threshold tuning
Ferroptosis defense axis (GPX4, FSP1/CoQ10)

Proteostasis is maintained by three interlocking systems: the ubiquitin-proteasome system for short-lived and misfolded proteins, macroautophagy for bulk cytoplasmic content, and lysosomal pathways for selective cargo.

Core Submodules

Macroautophagy initiation and flux (ULK1, Beclin-1, ATG cascade)
Lysosomal function, biogenesis, and acidification (TFEB/TFE3)
Ubiquitin-proteasome system capacity
Chaperone-mediated autophagy (CMA; LAMP-2A)

Important Submodules

ER stress and integrated stress response
Heat shock chaperone network
Aggrephagy and p62/SQSTM1 scaffold-mediated clearance
Selective autophagy receptor diversity
Proteostasis transcriptional programs (HSF1)
Proteasome cap regulatory dynamics

Peripheral Submodules

Lipophagy (lipid droplet selective turnover)
Reticulophagy / ER-phagy
Secretory autophagy and unconventional protein secretion
Xenophagy (selective autophagy of intracellular pathogens)

Mitochondrial integrity is central to cellular energetics, apoptotic priming, and ROS management. Age-associated mitochondrial dysfunction encompasses biogenesis decline, impaired quality control, and mtDNA mutation accumulation.

Core Submodules

Mitophagy machinery: PINK1/Parkin, BNIP3/BNIP3L, FUNDC1
Mitochondrial biogenesis execution (PGC-1a/NRF1/TFAM)
Respiratory chain integrity (ETC complexes I-IV)
Mitochondrial membrane potential maintenance

Important Submodules

Fusion/fission dynamics balance (OPA1/MFN1-2; DRP1)
UPRmt and mitochondrial proteostasis
mtROS generation, signaling, and redox
mtDNA integrity and replication fidelity
Mitochondrial calcium handling

Peripheral Submodules

mPTP sensitivity and apoptotic priming threshold
Mitochondrial metabolite signaling efflux
Cristae remodeling and inner membrane architecture

Genomic stability is maintained through an array of repair systems each specialized for distinct lesion types. Aging is accompanied by declining repair fidelity, accumulation of unresolved lesions, and a progressive shift toward error-prone repair pathways.

Core Submodules

DNA damage response signaling (ATM/ATR kinase cascade)
Double-strand break repair (HR via RAD51/BRCA; NHEJ via Ku70/80)
Nucleotide excision repair (global-genome and transcription-coupled)
Base excision repair and oxidative lesion repair

Important Submodules

Mismatch repair (MSH2/MSH6/MLH1/PMS2)
Replication stress response and stalled fork stabilization
PARP1/2 signaling as repair coordination and NAD+ consumer
Chromosomal stability checkpoints
Fanconi anemia pathway
Age-associated NHEJ vs. HR balance shift

Peripheral Submodules

Nucleotide pool balance and dNTP availability
Translesion synthesis polymerases
R-loop resolution and transcription-replication conflict
Repair factor expression regulation

Telomere attrition represents one of the most cell-autonomous and quantifiable aging clocks in somatic tissues. Telomere maintenance involves the telomerase complex, shelterin architecture, and heterochromatin maintenance.

Core Submodules

Telomerase regulation (TERT/TERC/dyskerin holoenzyme)
Shelterin complex integrity and end protection
Telomere damage response signaling

Important Submodules

Replicative senescence checkpoints (p21/p16 induction)
Telomere chromatin state maintenance (H3K9me3)
T-loop structural dynamics and G-quadruplex resolution
TERRA transcription and R-loop regulation

Peripheral Submodules

Telomere position effect on proximal gene expression
Alternative lengthening of telomeres (ALT)
Oxidative susceptibility of telomeric guanine residues

Epigenetic alterations constitute one of the strongest predictors of biological age. Age-associated epigenetic drift spans methylation patterns, histone marks, chromatin accessibility, and 3D nuclear architecture.

Core Submodules

DNA methylation maintenance and drift control (DNMT/TET)
Histone acetylation/deacetylation balance (HAT/HDAC)
Chromatin accessibility remodeling (SWI/SNF/BAF, ISWI, NuRD)
Polycomb/Trithorax antagonism (PRC2 vs. TrxG/MLL)

Important Submodules

Histone methylation and demethylation dynamics
Transcriptional program stability and cell identity
Pioneer transcription factor activity
RNA processing and splicing regulation
3D chromatin organization and TAD boundary integrity
Non-coding RNA regulation

Peripheral Submodules

Transposon and repeat element repression
Histone variant incorporation and turnover
DNA damage-induced chromatin changes
Epitranscriptomic modifications (m6A/pseudouridine)

Cellular senescence represents an antagonistic hallmark: initially tumor-suppressive, chronic senescent cell accumulation drives tissue dysfunction through SASP-mediated paracrine damage. This pathway is the direct target of the TimeWarp monthly senolytic protocol.

Core Submodules

Senescence induction and stable cell-cycle arrest (p16/p53/p21)
NF-kB canonical/non-canonical inflammatory activation
cGAS-STING cytosolic DNA sensing
SASP program generation (IL-6/IL-8/MMP3/PAI-1)

Important Submodules

NLRP3 inflammasome platform assembly
JAK1/2-STAT1/3/5 inflammatory signaling
Complement system activation
mTORC1-driven translational enhancement of SASP
Senescence immune surveillance and clearance failure

Peripheral Submodules

Bystander senescence induction via paracrine SASP
Resolution signaling and counter-regulatory balance
Cytokine receptor desensitization
Neutrophil extracellular trap (NET) formation

Stem cell exhaustion represents the integrative consequence of upstream damage accumulating in long-lived progenitor pools. Signaling pathways governing self-renewal, quiescence, and niche communication are progressively corrupted.

Core Submodules

Wnt/b-catenin signaling control of stem cell fate
Notch signaling for progenitor specification
TGF-b/BMP signaling gate (regeneration vs. fibrosis)

Important Submodules

Hedgehog signaling in tissue-specific niches
HIF-1a/HIF-2a hypoxic niche maintenance
mTOR-mediated metabolic control of quiescence
Growth factor receptor signaling for repair
Niche-derived retention and mobilization signals

Peripheral Submodules

Lineage commitment tuning and epigenetic poising
Asymmetric vs. symmetric division balance
Senescence-mediated niche disruption
ECM remodeling as niche mechanical signal

The extracellular matrix serves as both a structural scaffold and a signaling environment. Age-associated matrix stiffening, collagen crosslinking, and disrupted MMP/TIMP balance progressively alter mechanosensing and create a pro-fibrotic tissue milieu.

Core Submodules

ECM remodeling balance (MMP/TIMP ratio)
Mechanotransduction via YAP/TAZ and Hippo pathway
Matrix stiffness sensing and fibrotic reprogramming

Important Submodules

Integrin-FAK-Src signaling complex
Collagen crosslinking, glycation, and AGE-driven stiffening
Basement membrane integrity
Fibronectin remodeling and cell-matrix communication

Peripheral Submodules

Glycocalyx composition and microvascular mechanics
Proteoglycan turnover
Tissue oxygenation via matrix constraints
Mechanosensitive ion channels (Piezo1/2; TRPV4)

Beyond cell-autonomous mechanisms, aging is shaped by circulating factors, extracellular vesicles, and neuroendocrine signals that coordinate tissue states across the organism.

Core Submodules

Endocrine and paracrine signaling coordination
Extracellular vesicle and exosome cargo signaling
Systemic propagation of damage and resilience signals

Important Submodules

SASP propagation and circulating cytokine impact
Circulating rejuvenation factors (GDF11/Klotho/TIMP2)
Neuroendocrine coordination via hypothalamic-pituitary axis
Immune-to-tissue signaling crosstalk
Senolytic immune surveillance failure

Peripheral Submodules

Circulating miRNA species as systemic regulators
Hormone receptor sensitivity shifts
Platelet-derived aging factors
Bone marrow niche-derived systemic signals

The circadian clock is a master upstream regulator of metabolic, immune, and repair processes. Age-associated circadian dampening, reduced BMAL1 amplitude, and desynchrony between central and peripheral oscillators accelerates epigenetic aging.

Core Submodules

Core oscillatory clock machinery integrity (CLOCK/BMAL1; PER/CRY)
Circadian gating of metabolic control (NAMPT/NAD+ oscillation)
Circadian regulation of immune responsiveness

Important Submodules

Circadian control of autophagy and lysosomal function timing
Circadian influence on DNA repair capacity and timing
Circadian regulation of mitochondrial dynamics
Peripheral clock synchronization
Melatonin axis as systemic circadian entrainer

Peripheral Submodules

Sleep architecture coupling and restorative processes
Feeding-time alignment and chrono-nutrition
Temperature compensation of clock period
Circadian gating of senescence and SASP amplitude

The intestinal microbiome constitutes a dynamic signaling interface with host immunity, metabolism, and epigenetics. Age-associated dysbiosis contributes to systemic inflammation, metabolic dysfunction, and accelerated biological aging.

Core Submodules

Intestinal barrier integrity and permeability signaling
Microbial metabolite-to-host signaling (SCFAs, urolithins)
Immune modulation via microbiome-host pattern recognition

Important Submodules

Bile acid metabolism and microbial biotransformation
Microbiome influence on systemic inflammatory tone
Microbiome effects on nutrient sensing inputs
Tryptophan-derived microbial signaling (indoles/AhR)
Microbial diversity and age-associated composition shifts

Peripheral Submodules

Circadian effects on microbiome composition
Microbiome effects on epigenetic drift
Phage-bacteria dynamics and stability
Microbiome effects on mitochondrial function
Mucosal IgA-mediated microbiome shaping

Optimization Layer 2

Hallmarks ofAGING

The second layer of the model is the 12 Hallmarks of Aging. The hallmarks describe the biological consequences of aging.

Upstream cellular pathways drive these changes. The hallmarks allow us to measure the downstream effects.

Our approach focuses on influencing the pathways so their impact on the hallmarks improves.

Hallmarks of Aging visualization
Hallmarks visualization
Hallmarks of Aging visualization
Hallmarks visualization

Hallmarks of Aging Framework

Upstream
Cellular
Damage

Downstream
System
Failure

PRIMARY

Initiating Damage

Upstream sources of cellular damage

Genomic Instability Epigenetic Alterations Telomere Attrition Disabled Macroautophagy Loss of Proteostasis
ANTAGONISTIC

Amplifying Response

Beneficial at low levels, harmful when chronic

Deregulated Nutrient Sensing Mitochondrial Dysfunction Cellular Senescence
INTEGRATIVE

System-Level Failure

Downstream consequences of accumulated damage

Stem Cell Exhaustion Altered Intercellular Communication Chronic Inflammation Dysbiosis

Not all hallmarks play the same role in aging. Some represent upstream sources of cellular damage, while others reflect downstream consequences that emerge over time.

Our optimization model accounts for this structure. By focusing on upstream biological drivers, interventions can influence multiple aging processes at once.

The diagram illustrates how the 12 hallmarks interact across this upstream-to-downstream architecture.

Hallmarks of Aging wheel
12 Hallmarks of Aging overview

Deep Dive

Explore Each Hallmark

Select any hallmark below to learn what it is and why it matters

Genomic Instability

Genomic Instability

DNA Damage

DNA Wear and Tear

Ever wonder why our bodies age? One major reason is genomic instability. Our DNA is like the instruction manual for our cells, and over time it collects errors. Think of it like an IKEA manual full of mistakes and missing steps, the final product won't come together the way it should.

What it Means

DNA is constantly under stress from UV rays, pollution, and even normal cell processes. Over time this leads to mutations, broken strands, and faulty repairs that accumulate inside cells.

Why it Matters

  • Mutations: Changes in the DNA code that disrupt normal cell activity
  • Broken strands: DNA that snaps or frays under stress
  • Faulty repairs: The body fixes damage but introduces errors. These errors build up and cause cells to malfunction, which accelerates aging and increases disease risk
Genomic Instability
Epigenetic Alterations

Epigenetic Alterations

Gene Switch Malfunction

The Broken Light Switch

Your genes are like thousands of light switches that tell your body when to turn certain functions on or off. With age, these switches get faulty, some stay on when they should be off, and others fail to turn on at all.

What it Means

Epigenetic changes don't alter your genes themselves, but they change how your genes are read. Over time, this misregulation leads to cells acting older and less efficient.

Why it Matters

  • Important repair genes can get silenced
  • Harmful pathways can become overactive
  • Leads to faster aging and higher disease risk
Epigenetic Alterations
Telomere Attrition

Telomere Attrition

Chromosome End Damage

The Fraying Shoelace

Telomeres are like the plastic tips at the ends of shoelaces, protecting your DNA from unraveling. Each time a cell divides, telomeres get shorter. Eventually, the tips wear down so much that the shoelace, or in this case, the DNA, starts to fall apart.

What it Means

Telomeres shorten naturally as part of aging, but stress, poor lifestyle, and inflammation speed this process up. Once they're too short, the cell can no longer divide and becomes inactive.

Why it Matters

  • Cells with critically short telomeres stop renewing
  • Linked to weaker immunity and slower tissue repair
  • Considered one of the most reliable markers of biological aging
Telomere Attrition
Disabled Macroautophagy

Disabled Macroautophagy

Recycling System Breakdown

The City Without Trash Collection

Autophagy is the body's recycling program: cells break down and reuse old parts to stay efficient. With age, this system slows, like a city where garbage trucks stop coming. Waste piles up, and everything runs worse.

What it Means

Autophagy helps clear out defective proteins and organelles. When this process falters, damaged components accumulate, weakening cells.

Why it Matters

  • Clogged cells can't recycle or repair properly
  • Energy production suffers
  • Accelerates aging across multiple organs
Disabled Macroautophagy
Loss of Proteostasis

Loss of Proteostasis

Protein Buildup

Clogged Cell Machinery

Proteins are like tiny machines that keep your cells running smoothly. But with age, damaged or misshaped proteins pile up. It's like having a factory floor full of broken machines that no one hauls away; eventually, the whole factory slows down.

What it Means

Normally, the body clears out misfolded proteins. But with aging, that system weakens, and proteins begin clumping together, especially in the brain and muscles.

Why it Matters

  • Protein clumps block normal cell function
  • A key factor in diseases like Alzheimer's and Parkinson's
  • Accelerates decline in tissue strength and resilience
Loss of Proteostasis
Deregulated Nutrient Sensing

Deregulated Nutrient Sensing

Metabolic Miscommunication

The Broken Thermostat

Nutrient-sensing pathways are like a thermostat for energy, deciding when to grow, conserve, or repair. With age, the thermostat malfunctions, and cells misread the body's nutrient signals.

What it Means

Over time, nutrient-sensing pathways like insulin and mTOR get out of sync, leading to miscommunication about how the body should use energy.

Why it Matters

  • Drives weight gain and insulin resistance
  • Over-activates growth pathways that speed aging
  • Reduces energy efficiency across the body
Deregulated Nutrient Sensing
Mitochondrial Dysfunction

Mitochondrial Dysfunction

Powerhouse Decline

The Fading Batteries

Mitochondria are your cell's batteries, powering movement, thinking, and repair. With age, they start producing less energy and more harmful byproducts, like a battery that leaks acid instead of holding a charge.

What it Means

As mitochondria break down, cells struggle to power their basic functions. The damage also spreads oxidative stress throughout the body.

Why it Matters

  • Causes fatigue and slower recovery
  • Weakens brain, muscle, and heart performance
  • Fuels other hallmarks like inflammation and cell death
Mitochondrial Dysfunction
Cellular Senescence

Cellular Senescence

Zombie Cells

The Bad Neighbors

Sometimes cells stop dividing but refuse to die. Instead, they hang around like bad neighbors, blasting toxic signals that damage the whole block.

What it Means

These zombie cells release harmful molecules called SASPs, which spread inflammation and disrupt healthy tissue.

Why it Matters

  • Build up more and more with age
  • Linked to arthritis, heart disease, and skin aging
  • Block tissue repair and accelerate decline
Cellular Senescence
Stem Cell Exhaustion

Stem Cell Exhaustion

Repair System Failure

The Retired Workforce

Stem cells are the body's repair crew, always ready to replace damaged cells. But with age, this workforce shrinks and becomes less capable, leaving tissues with no one to fix the damage.

What it Means

Stem cells lose energy and numbers over time, reducing their ability to regenerate skin, muscles, blood, and other tissues.

Why it Matters

  • Healing slows after injury
  • Muscles, skin, and immune defenses weaken
  • A major driver of frailty and age-related decline
Stem Cell Exhaustion
Altered Intercellular Communication

Altered Intercellular Communication

Mixed Signals System

Static on the Line

Cells need clear communication to stay in sync, like radios on the same frequency. With age, the signals get scrambled, creating static that confuses cells and organs.

What it Means

Aging cells release distorted signals that spread stress and inflammation throughout the body.

Why it Matters

  • Weakens the immune system
  • Fuels chronic inflammation
  • Disrupts balance between tissues and organs
Altered Intercellular Communication
Chronic Inflammation

Chronic Inflammation

Inflammaging

The Smoldering Fire

Inflammation is good in short bursts: it heals cuts and fights infections. But with age, the body often slips into a constant low-grade inflammation, like a fire that never burns out.

What it Means

This inflammaging damages tissues slowly and silently, affecting the entire body.

Why it Matters

  • Fuels heart disease, diabetes, and dementia
  • Weakens healthy tissue over time
  • Makes other hallmarks of aging worse
Chronic Inflammation
Dysbiosis

Dysbiosis

Gut Microbiome Imbalance

The Unbalanced Ecosystem

Your gut is home to trillions of bacteria that act like a rainforest ecosystem. With age, harmful species overgrow while helpful ones decline, throwing the system off balance.

What it Means

This imbalance, called dysbiosis, weakens the gut's ability to support digestion, immunity, and whole-body health.

Why it Matters

  • Increases inflammation and leaky gut
  • Disrupts metabolism and nutrient absorption
  • Affects immunity, mood, and brain health
Dysbiosis

Optimization Layer 3

MechanisticSCORING

A weighted pathway-hallmark matrix evaluates mechanistic coverage to produce a structured compound score. This layer freezes the compound scoring and evaluation architecture.

The model connects upstream pathway engagement to downstream hallmark impact through a multi-layer scoring surface.

Each compound is scored based on the specific biological submodules it engages, the strength of evidence for those interactions, and how those pathways propagate through the weighted importance surface to influence measurable aging hallmarks.

The scoring architecture includes structural safeguards to prevent distortion from hub pathways, double-counting, and redundancy across compound families.

Mechanistic scoring visualization
From Pathways to Aging Outcomes

Pathway-to-Hallmark Mapping Matrix

How each aging pathway connects to the 12 hallmarks of aging

Primary driver
Secondary
Modulator
No connection

Each pathway's relationship to aging systems is graded as primary, secondary, modulator, or none. This prevents inflated credit and ensures that only mechanistically justified connections contribute to compound scores.

  • Primary driver: direct mechanistic causation
  • Secondary: established indirect influence
  • Modulator: context-dependent or conditional effect
  • No connection: relationship not supported by evidence

The pathway-to-hallmark mapping matrix (A matrix) defines the structural architecture of the scoring system.

A MATRIX — PATHWAY × HALLMARK MAPPING GIEATAMALPNSMDCSSEICCIDYP1 NAD+PSSPPSMSP2 RedoxSPSSMPP3 AutophagyPSPPSSSMSP4 Mito QCSSPMSSP5 NutrientSPSSSPMP6 EpigeneticSPSMSP7 DNA RepairPSSSPSSP8 SenescenceSSPSPPP9 TelomereSPSP Primary Secondary Modulator None

Pathway importance, hallmark importance, and their connections are combined into a weighted importance surface.

  • Pathway weights reflect upstream mechanistic breadth
  • Hallmark weights reflect clinical relevance and measurability
  • Connection weights capture pathway-hallmark link strength
  • Weighted matrix formula: W = A x wH x wP

The resulting surface ensures compounds are scored not just on what they target, but on how important those targets are.

WEIGHTED IMPORTANCE SURFACE Pathway Weights wP — upstream breadth Hallmark Weights wH — clinical relevance A Matrix Connection strength × W = A × wH × wP Weighted Importance Surface Higher weight = greater influence on compound scoring

Compounds are evaluated by the specific submodules they engage and the strength of evidence for that engagement.

  • Submodule engagement: which mechanisms does the compound activate
  • Mechanistic evidence: strength of supporting research
  • Pathway importance: how central is the engaged pathway
  • Hallmark connection: how strongly does the pathway influence aging

Each compound receives a Compound Longevity Score reflecting its total mechanistic contribution.

COMPOUND EVALUATION PIPELINE NMN (example) 1. Submodule Engagement 8 / 12 hit 2. Mechanistic Evidence Strong 3. Pathway Importance High 4. Hallmark Connection 11 / 12 Score: 92%

Anti double-count rules, hub normalization, and redundancy controls prevent distortion.

  • Hub normalization prevents highly connected pathways from inflating scores
  • Anti double-count rules prevent crediting the same mechanism twice
  • Redundancy consolidation identifies overlapping compounds
  • Family controls group structural variants to prevent stacking bias

These safeguards ensure final rankings reflect genuine biological contribution, not scoring artifacts.

STRUCTURAL SAFEGUARDS Hub Normalization Highly connected pathways dampened Normalized Weight Proportional contribution Anti Double-Count overlap Same mechanism credited once Deduplicated Credit A B Each scored independently Redundancy Consolidation Resveratrol Stilbene Pterostilbene Stilbene Stilbene Family Group Best-in-class selected Rankings reflect genuine biological contribution, not scoring artifacts

Hundreds

of mechanistic pathway interactions evaluated

Compound Universe landscape Compound Universe landscape

Optimization Layer 4

CompoundUNIVERSE

We mapped the full landscape of compounds studied for their potential to influence aging biology.

This library, which we call the Compound Universe, includes natural molecules, plant compounds, and nutraceutical ingredients supported by mechanistic research, preclinical studies, and human evidence.

Inclusion required commercial availability in the US or EU, peer-reviewed mechanistic support, safety at commonly supplemented doses, clear mappability to defined pathway submodules, and practical formulatability.

  • Commercial availability in the US or EU
  • Peer-reviewed mechanistic support
  • Safety at commonly supplemented doses
  • Clear mappability to defined pathway submodules
  • Practical formulatability

Exclusions included prescription-only agents, research-only compounds, molecules without sufficient mechanistic resolution, and compounds with regulatory or safety constraints.

The final universe included 240 non-prescription compounds across 28 pharmacological classes. Grouped by pharmacology, not pathway relevance, to avoid structural bias.

  • Delivery-form variants share mechanistic records
  • Distinct relatives are scored independently
  • Structural clustering is flagged in rankings
  • Select prescription agents retained only as mechanistic benchmarks

Every compound was evaluated before any formulation decision was made.

Compound Universe continued

Evaluation Framework

We evaluated each compound using a structured evidence framework that connects mechanisms, pathways, and aging outcomes. Each candidate is evaluated for:

Pathway Influence

Which upstream aging pathways does the compound engage

Hallmark-Level Impact

How does pathway engagement translate to hallmark coverage

Human Clinical Evidence

Quality and depth of human research supporting the compound

Compatibility

Interaction profile with other interventions in the stack

240 longevity molecules evaluated
~40K molecular interactions analyzed

Optimization Layer 5

EvidenceMAPPING

We evaluated each compound using a structured evidence framework that connects mechanisms, pathways, and aging outcomes.

Rather than relying on individual studies, we assess how compounds influence aging biology as a system.

Each candidate is evaluated for:

  • Pathway influence
  • Hallmark-level impact
  • Human clinical evidence
  • Compatibility with other interventions
Compound evidence to pathway interaction matrix
Evidence mapping continued

The result is a ranked shortlist of longevity interventions with the strongest mechanistic influence on the drivers of aging.

Compound ranking process
Evidence-based compound scoring

Filtering, Ranking and Scoring example for illustrative purposes only

Compound Universe240 Candidates
Evidence Mapping1,000+ Studies Analyzed
Model ScoringPathway Impact
Ranked ShortlistTop Interventions

240 longevity molecules evaluated
~40K molecular interactions analyzed

Optimization Layer 6

CompoundINTERACTIONS

High-ranking compounds were then evaluated as a system, accounting for synergy, redundancy, and safety interactions.

A compound's individual score tells you what it does alone. But longevity protocols don't use compounds alone. The interaction layer evaluates how compounds behave together.

Some pairings amplify each other's effects through complementary mechanisms. Others are redundant, covering the same pathways without added benefit. And some introduce safety concerns when combined or conflict with common medications.

This layer reshapes the rankings. Compounds can be pulled up into consideration (synergy helpers, bioavailability enhancers) or pushed out (redundant coverage, interaction risks) based on how they perform as a system.

Compound interactions
Ranked longevity compounds

Synergistic Amplification

The model identifies compound pairings where complementary mechanisms produce stronger combined effects than either compound alone.

Example interaction

NAD+ Precursor + CD38 Inhibitor

One compound supplies NAD+ precursor material. The other blocks the enzyme that degrades NAD+. Together they boost NAD+ levels from both supply and demand sides.

Redundancy & Overlap

When two compounds score well but act through nearly identical mechanisms, the model favors the one with stronger evidence or better bioavailability.

Example interaction

Thymoquinone (black seed)

Scores well for anti-inflammatory NF-kB suppression. But this pathway is already covered more potently by curcumin, EGCG, and dihydroberberine. Diminishing returns.

Safety Interaction Screening

Compounds are screened for interactions with each other, common medications, and cumulative side effect profiles when stacked.

Example interaction

Genistein + stilbene compounds

Both have estrogenic activity. Stacking phytoestrogens creates cumulative hormone-modulating load, problematic for hormone-sensitive conditions.

Compound Interaction Grid

Illustrative sample of pairwise interactions across 14 compounds from the top 50 ranked longevity compounds in the compound universe

Synergistic
Redundant
Safety flag
Neutral

Representative sample from the full interaction analysis. Hover cells for mechanism details.

A sampling of compound pairings identified by the model where complementary mechanisms produce amplified combined effects.

NAD+ precursor + CD38 inhibitor

One compound supplies the raw material for NAD+ biosynthesis. The other blocks CD38, the primary enzyme responsible for NAD+ degradation. Addresses NAD+ from both supply and demand sides simultaneously.

Curcuminoid + bioavailability enhancer

Curcumin has potent NF-kB pathway activity but poor absorption due to rapid glucuronidation. Piperine inhibits this process, increasing bioavailability by up to 2000%. The enhancer scores low individually but is pulled up for amplification value.

Glucosinolate + conversion enzyme

Glucoraphanin requires enzymatic conversion to its active form (sulforaphane). Without the co-administered conversion enzyme myrosinase, bioavailability drops dramatically. The model treats these as a paired system.

Mitophagy activator + mitochondrial biogenesis driver

One compound clears damaged mitochondria (mitophagy). Another fuels the creation of new ones (biogenesis via NAD+/PGC-1a). Together they drive complete mitochondrial renewal.

Senolytic flavonoid + absorption enhancer

Certain flavonoids with senolytic properties have limited oral bioavailability. Proteolytic enzymes like bromelain enhance flavonoid absorption, amplifying senolytic reach during acute dosing.

SIRT1 activator + NAD+ precursor

SIRT1 activation requires NAD+ as a mandatory cofactor. Providing the activator without sufficient NAD+ limits the pathway. Pairing ensures the sirtuin pathway is fed from both sides.

Macroautophagy inducer + senolytic

Spermidine-class compounds induce autophagy to maintain healthy cells. Senolytic compounds clear cells beyond repair. Together: maintain what can be saved, remove what cannot.

NRF2 activators via different induction pathways

EGCG activates NRF2 through electrophilic signaling. Sulforaphane activates NRF2 through KEAP1 modification. Different upstream triggers produce complementary antioxidant activation.

Cofactor and methylation support

Certain B-vitamins score low on longevity pathway engagement but support methylation cycling, neurotransmitter synthesis, and mineral absorption. System-level enablers pulled into consideration.

A sampling of cases where the model identified significant mechanistic overlap between high-scoring compounds.

Thymoquinone (black seed oil)

Scores well for anti-inflammatory activity via NF-kB suppression. However, this pathway is already covered more potently by curcumin, EGCG, and dihydroberberine across multiple mechanisms. Diminishing marginal coverage.

Stilbene family: resveratrol vs pterostilbene

Both target the same pathways via identical SIRT1 activation. Pterostilbene has approximately 4x better oral bioavailability and a longer half-life due to its dimethylated structure. The model favors pterostilbene and flags resveratrol as redundant.

Quercetin family: standard vs glycoside form

Standard quercetin and its glycoside form target the same flavonol pathways. The glycoside form has superior water solubility and absorption. The standard form is excluded as redundant.

Luteolin

Broad pathway coverage across P2/P1/P8 but overlaps heavily with EGCG and curcumin. Adding luteolin after these compounds are selected provides minimal new hallmark coverage.

Ginsenosides

Broad pathway engagement but evidence base is disproportionately provisional (over 80% provisional vs evidence-backed scores). Excluded due to low confidence despite strong raw scoring.

A sampling of compound interactions flagged during safety screening, including compound-to-compound conflicts and medication interaction risks.

CYP enzyme stacking (EGCG + berberine)

Both inhibit CYP liver enzymes. Combined use can slow metabolism of each other, increasing effective dose beyond intended levels. Requires careful dose calibration or timing separation.

Phytoestrogen stacking (genistein + stilbenes)

Genistein has significant estrogenic activity. Resveratrol and pterostilbene have mild estrogenic properties. Stacking creates cumulative hormone-modulating load, problematic for hormone-sensitive conditions.

Cumulative sedation (melatonin + luteolin)

Both have sedative properties. Luteolin acts as a GABAa receptor modulator. Melatonin promotes sleep onset. Combined use creates cumulative CNS depression risk.

Cumulative hypotension (melatonin + berberine)

Both compounds independently lower blood pressure. Stacking multiple hypotensive agents creates significant cardiovascular risk, especially for users on blood pressure medications.

Standard berberine HCl vs dihydroberberine

Standard berberine causes significant GI distress and interacts with metformin (hypoglycemia risk). Dihydroberberine offers approximately 5x better absorption at lower doses with reduced GI and interaction profile.

Olive-derived polyphenols (oleuropein, hydroxytyrosol)

Both show cardiovascular benefits in isolation but carry interaction risks with blood pressure medications, statins, and anticoagulants. Excluded to maintain broad compatibility with commonly prescribed medications.

240 compounds

screened for pairwise synergy, redundancy, and safety interactions

Optimization Layer 7

Formulation &DELIVERY

After compound selection and interaction screening, the optimized stack must be translated into a physical product that can actually be manufactured, dosed, and delivered.

This layer applies a new set of constraints: capsule capacity, ingredient stability, bioavailability limitations, and real-world dosing feasibility. Compounds that survive the biological optimization must now survive the engineering optimization.

The goal is to maximize biological impact within the physical limits of a daily protocol format, while selectively upgrading only the compounds that need enhanced delivery to be effective.

Delivery Format Comparison

Evaluating delivery systems against longevity protocol requirements

Format
Dose capacity
Taste exposure
Stability
Dose precision
Fit for protocol
CapsulesSize 00, 1-5g daily
Moderate
None
High
High
Excellent
Powders5-15g daily
Very high
High
Moderate
Moderate
Limited
LiquidsVariable
High
High
Lower
Moderate
Limited
GummiesLow capacity
Low
Moderate
Lower
Low
Limited

Capsules selected as optimal delivery format

Capsules allow precise dosing of bioactive compounds at research-level concentrations while maintaining formulation stability, avoiding taste masking challenges, and supporting practical daily compliance.

Delivery Architecture

The daily protocol was designed around six size-00 capsules per day. Size-00 is widely used in advanced nutraceutical formulations because it balances ingredient capacity (~750mg per capsule), swallowability, and daily adherence.

With six capsules, the total delivery budget is approximately 4,500mg of active material plus excipients. Every milligram is allocated against the compound scoring and interaction analysis from earlier layers.

Some compounds earn large allocations because their evidence base demands it. Calcium alpha-ketoglutarate, for example, requires 1,000mg to reach its clinically studied dose, consuming over 20% of the total capsule budget.

This is a real constraint optimization: maximizing biological impact per milligram of available capsule space.

Each size-00 capsule has approximately 750mg of total capacity. With six capsules per day, the daily protocol operates within a ~4,500mg delivery budget. Every milligram is allocated against the compound scoring from earlier optimization layers.

  • Each capsule was engineered in collaboration with the manufacturer to maximize fill volume, pushing the physical limits of what fits within a size-00 format
  • Higher-scoring compounds receive priority allocation when capsule space is constrained
  • Ingredient density, flow properties, and excipient requirements affect how much active material fits per capsule
  • Ca-AKG alone requires 1,000mg (22% of total budget) based on clinical dosing evidence
  • Standard-form CoQ10 was evaluated but excluded partly because its effective dose consumed too much capsule space relative to its interaction-adjusted score
  • The optimization balances maximum biological impact against the hard physical limit of capsule volume

Compounds that cannot be delivered within the defined daily protocol architecture are removed or replaced with more practical alternatives.

  • Compounds requiring doses above what capsule delivery can accommodate are evaluated for concentrated or enhanced forms
  • Ingredients with stability issues in capsule format require specialized handling or exclusion
  • Some compounds are replaced with more bioavailable derivatives that achieve equivalent or superior effect at lower doses, freeing capsule space
  • This ensures every compound in the final formulation can be delivered at a meaningful biological level

Each remaining compound is evaluated against evidence-based dosing ranges to ensure the daily protocol reflects meaningful biological exposure. The goal is to deliver research-level dosing, not token amounts.

  • Dosing targets are derived from human clinical studies where available
  • Where human data is limited, doses are extrapolated from preclinical models adjusted for bioavailability
  • The model avoids both under-dosing (biologically ineffective) and over-dosing (diminishing returns, wasted capsule space)
  • Each compound dose is validated against the remaining capsule capacity budget
  • Some compounds appear conservatively dosed but are optimized through enhanced delivery: liposomal EGCG at 80mg delivers effectively what would require significantly higher standard dosing

Not every compound needs an engineering upgrade. Many high-scoring compounds are already well-absorbed in their standard forms. The formulation takes a selective, strategic approach: upgrading only the compounds where standard delivery would significantly limit biological effectiveness.

  • Curcumin: phytosomal form (MaxiCuma) paired with piperine for dramatically improved absorption vs standard extract
  • Glucoraphanin + myrosinase: delayed-release capsule protects the enzyme through stomach acid for intestinal conversion to sulforaphane. Direct sulforaphane is highly unstable and degrades rapidly, making the precursor + enzyme approach significantly more reliable
  • EGCG: liposomal delivery for enhanced cellular uptake, allowing effective dosing at 80mg
  • Berberine: dihydroberberine derivative with ~5x better absorption at lower dose and reduced GI distress
  • Fisetin: liposomal form paired with bromelain for improved flavonoid bioavailability during the monthly senolytic pulse
  • Urolithin A: standardized pure form that bypasses the gut microbiome conversion step. Only ~40% of people produce urolithin A naturally from food sources

Each upgrade addresses a specific delivery limitation. Compounds that are already well-absorbed in their standard forms (pterostilbene, NMN, spermidine, Ca-AKG, apigenin, rhodiola) are used as-is to avoid unnecessary cost and complexity.

Monthly protocol

Senolytic Pulse Architecture

Senolytic compounds work fundamentally differently from the daily protocol. Rather than continuous supplementation, the research supports a hit and run dosing strategy: a high acute dose followed by a clearance period.

This reflects the biology. Senescent cells need time to clear after being targeted, and the immune system needs to process cellular debris. Continuous low-dose senolytic exposure could actually be counterproductive.

The monthly senolytic sachet delivers a concentrated pulse of liposomal fisetin and isoquercetin with bromelain for absorption enhancement, designed to mirror the intermittent dosing protocols used in senolytic research.

Continuous daily dosing

Low sustained senolytic exposure. Does not match research protocols. May cause incomplete clearance cycles and chronic inflammation from unresolved cellular debris.

Intermittent pulse dosing

High acute dose followed by clearance period. Matches clinical research design. Allows complete senescent cell removal and immune processing between cycles.

The result is a formulation architecture that preserves the scientific integrity of the optimization model while translating it into a practical longevity protocol.

6 daily capsules

delivering research-level dosing across 12 hallmarks of aging

1 monthly sachet

intermittent senolytic pulse targeting senescent cell clearance

Optimization Layer 8

Protocol USABILITY

The #1 failure mode in longevity supplementation is non-compliance. People stop because it's too complex or too inconvenient.

The best protocol is the one you actually take every day.

Functional Grouping

Compounds organized by biological role. Compliance architecture, not marketing.

Daily 2 capsules

Core

Cellular energy, DNA integrity, metabolic regulation.

  • Ca-AKG 1,000mg — metabolic substrate
  • Pterostilbene 50mg — sirtuin activator
  • Cycloastragenol 10mg — telomere support
  • Mg Bisglycinate 200mg — cofactor
  • Vitamin B6 10mg — methylation support
Daily 2 capsules

Energize

Mitochondrial renewal, NAD+ biosynthesis, adaptogenic performance.

  • NMN 350mg — NAD+ precursor
  • Urolithin A 500mg — mitophagy activator
  • Apigenin 50mg — CD38 inhibitor
  • Liposomal EGCG 80mg — NRF2 activator
  • Rhodiola 200mg — adaptogen
  • 5-MTHF 0.5mg — active folate
  • B12 0.2mg — methylcobalamin
  • Vitamin D3 50mcg — immune / bone
Daily 2 capsules

Protect

Inflammation, oxidative stress, senescence, cellular defense.

  • Liposomal Curcumin 150mg — NF-kB suppression
  • Dihydroberberine 100mg — AMPK activator
  • Glucoraphanin 70mg — NRF2 (delayed release)
  • Myrosinase 50mg — conversion enzyme
  • Sodium Ascorbate 65mg — myrosinase cofactor
  • Spermidine 10mg — autophagy inducer
  • K2 MK-7 150mcg — calcium direction
  • Piperine 5mg — bioavailability enhancer
Monthly 2 capsules

Senolytic Cleanse

Monthly senolytic pulse. High acute dose, then clearance. Matches research protocols.

  • Liposomal Fisetin 300mg — senolytic flavonoid
  • Isoquercetin 150mg — senolytic support
  • Piperine 5mg — absorption enhancer
  • Bromelain 500mg — flavonoid absorption
  • Fenugreek Galactomannan 150mg — carrier matrix

Single daily dose by design

Splitting into multiple daily doses has marginal absorption benefit but significant compliance cost.

One dose with a meal. Every additional decision point is a dropout event.

Population scope

Targets fundamental mechanisms (NAD+, autophagy, senescence, inflammation) that operate consistently across biological sex.

Precision stratification is a future layer. Differentiate when data supports it, not before.

Packaging as Compliance Architecture

Pre-portioned daily sachets. Six capsules, ready to take. No counting, no sorting, no bottles.

One box. One month. One subscription. The entire protocol.

Pre-portioned daily sachets

Six capsules per day. No counting, no pill organizers, no decision fatigue.

One box, one month

30 daily sachets plus the monthly senolytic pulse. No managing multiple bottles.

Color-coded functional groups

Core, Energize, and Protect are visually distinct. Users see what they take and understand the system.

Perceptible Benefits

Rhodiola supports focus. NMN drives energy. Magnesium supports sleep. B-vitamins support mood. Short-term reinforcement for long-term compliance.

Not the primary purpose. A deliberate design feature that drives adherence.

Some compounds are impractical at scale due to cost, supply, or manufacturing limits.

  • Premium forms used where biological benefit justifies cost
  • Standard forms where equally effective
  • Sustainably manufactured at consistent quality

A unified system, not a supplement collection.

  • All capsules manufactured and shipped as one product
  • Sachet format enables consistent QC per dose
  • Supports future iterations within the same framework

Complex aging research, translated into a single daily action.

1 sachet, 30 seconds, every day

the entire protocol reduced to a single daily action

Optimization Layer 9

Long-TermSAFETY

The final layer of the optimization model evaluates the complete protocol for long-term safety, tolerability, and real-world compatibility.

A longevity protocol is designed for indefinite daily use. Unlike short-term supplementation, the safety bar must account for cumulative exposure over months and years.

Every compound that reaches this stage has already passed biological scoring, interaction screening, and formulation engineering. This layer asks one final question: is this safe for sustained, long-term use across a broad population?

Cumulative system load

The full compound stack is evaluated for cumulative burden on liver metabolism, kidney clearance, and other organ systems. Compounds that individually pass safety screening may create excessive load when combined. The model evaluates the protocol as a complete system, not as individual ingredients.

Medication compatibility

The protocol is designed to avoid compounds that conflict with commonly prescribed medications in the target demographic, including statins, blood pressure medications, blood thinners, and diabetes medications. Compounds with significant drug interaction profiles were excluded or replaced with safer alternatives during earlier optimization layers.

Tolerability and adherence

Compounds that cause common side effects (GI distress, headaches, sleep disruption) are replaced with better-tolerated forms where possible. Dihydroberberine was selected over standard berberine specifically for this reason. A protocol that causes discomfort will not be taken consistently.

Ingredient quality standards

Every ingredient in the protocol must meet defined standards for purity, heavy metal limits, microbial contamination, and identity verification. These standards are built into the manufacturing specifications, not treated as optional quality checks.

Ongoing monitoring framework

The safety evaluation does not end at formulation. The protocol is designed to support users in tracking relevant biomarkers over time and adjusting as new research emerges. The optimization model is a living system that incorporates updated safety data as it becomes available.

Important medical disclaimer

This product is a dietary supplement and is not intended to diagnose, treat, cure, or prevent any disease. The statements on this website have not been evaluated by the Food and Drug Administration.

Always consult with a qualified healthcare professional before starting any new supplement regimen, especially if you are pregnant, nursing, taking medication, or have a pre-existing medical condition.

Individual results may vary. The information provided here is for educational purposes and should not be considered medical advice. Do not discontinue or modify any current medication or treatment plan without consulting your physician.

Nine layers of optimization. From aging pathways to long-term safety. Every decision documented, every tradeoff evaluated, every compound earned its place.

9 optimization layers

from biological theory to a protocol you can trust